#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
r"""
Analytic Acquisition Functions that evaluate the posterior without performing
Monte-Carlo sampling.
"""
from __future__ import annotations
from abc import ABC
from copy import deepcopy
from typing import Dict, Optional, Tuple, Union
import torch
from botorch.acquisition.acquisition import AcquisitionFunction
from botorch.acquisition.objective import ScalarizedObjective
from botorch.exceptions import UnsupportedError
from botorch.models.gp_regression import FixedNoiseGP
from botorch.models.gpytorch import GPyTorchModel
from botorch.models.model import Model
from botorch.posteriors.posterior import Posterior
from botorch.sampling.samplers import SobolQMCNormalSampler
from botorch.utils.transforms import convert_to_target_pre_hook, t_batch_mode_transform
from torch import Tensor
from torch.distributions import Normal
[docs]class AnalyticAcquisitionFunction(AcquisitionFunction, ABC):
r"""Base class for analytic acquisition functions."""
def __init__(
self, model: Model, objective: Optional[ScalarizedObjective] = None
) -> None:
r"""Base constructor for analytic acquisition functions.
Args:
model: A fitted single-outcome model.
objective: A ScalarizedObjective (optional).
"""
super().__init__(model=model)
if objective is None:
if model.num_outputs != 1:
raise UnsupportedError(
"Must specify an objective when using a multi-output model."
)
elif not isinstance(objective, ScalarizedObjective):
raise UnsupportedError(
"Only objectives of type ScalarizedObjective are supported for "
"analytic acquisition functions."
)
self.objective = objective
def _get_posterior(self, X: Tensor) -> Posterior:
r"""Compute the posterior at the input candidate set X.
Applies the objective if provided.
Args:
X: The input candidate set.
Returns:
The posterior at X. If a ScalarizedObjective is defined, this
posterior can be single-output even if the underlying model is a
multi-output model.
"""
posterior = self.model.posterior(X)
if self.objective is not None:
# Unlike MCAcquisitionObjective (which transform samples), this
# transforms the posterior
posterior = self.objective(posterior)
return posterior
[docs] def set_X_pending(self, X_pending: Optional[Tensor] = None) -> None:
raise UnsupportedError(
"Analytic acquisition functions do not account for X_pending yet."
)
[docs]class ExpectedImprovement(AnalyticAcquisitionFunction):
r"""Single-outcome Expected Improvement (analytic).
Computes classic Expected Improvement over the current best observed value,
using the analytic formula for a Normal posterior distribution. Unlike the
MC-based acquisition functions, this relies on the posterior at single test
point being Gaussian (and require the posterior to implement `mean` and
`variance` properties). Only supports the case of `q=1`. The model must be
single-outcome.
`EI(x) = E(max(y - best_f, 0)), y ~ f(x)`
Example:
>>> model = SingleTaskGP(train_X, train_Y)
>>> EI = ExpectedImprovement(model, best_f=0.2)
>>> ei = EI(test_X)
"""
def __init__(
self,
model: Model,
best_f: Union[float, Tensor],
objective: Optional[ScalarizedObjective] = None,
maximize: bool = True,
) -> None:
r"""Single-outcome Expected Improvement (analytic).
Args:
model: A fitted single-outcome model.
best_f: Either a scalar or a `b`-dim Tensor (batch mode) representing
the best function value observed so far (assumed noiseless).
objective: A ScalarizedObjective (optional).
maximize: If True, consider the problem a maximization problem.
"""
super().__init__(model=model, objective=objective)
self.maximize = maximize
if not torch.is_tensor(best_f):
best_f = torch.tensor(best_f)
self.register_buffer("best_f", best_f)
[docs] @t_batch_mode_transform(expected_q=1, assert_output_shape=False)
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate Expected Improvement on the candidate set X.
Args:
X: A `b1 x ... bk x 1 x d`-dim batched tensor of `d`-dim design points.
Expected Improvement is computed for each point individually,
i.e., what is considered are the marginal posteriors, not the
joint.
Returns:
A `b1 x ... bk`-dim tensor of Expected Improvement values at the
given design points `X`.
"""
self.best_f = self.best_f.to(X)
posterior = self._get_posterior(X=X)
mean = posterior.mean
# deal with batch evaluation and broadcasting
view_shape = mean.shape[:-2] if mean.dim() >= X.dim() else X.shape[:-2]
mean = mean.view(view_shape)
sigma = posterior.variance.clamp_min(1e-9).sqrt().view(view_shape)
u = (mean - self.best_f.expand_as(mean)) / sigma
if not self.maximize:
u = -u
normal = Normal(torch.zeros_like(u), torch.ones_like(u))
ucdf = normal.cdf(u)
updf = torch.exp(normal.log_prob(u))
ei = sigma * (updf + u * ucdf)
return ei
[docs]class PosteriorMean(AnalyticAcquisitionFunction):
r"""Single-outcome Posterior Mean.
Only supports the case of q=1. Requires the model's posterior to have a
`mean` property. The model must be single-outcome.
Example:
>>> model = SingleTaskGP(train_X, train_Y)
>>> PM = PosteriorMean(model)
>>> pm = PM(test_X)
"""
[docs] @t_batch_mode_transform(expected_q=1)
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate the posterior mean on the candidate set X.
Args:
X: A `(b) x 1 x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
Returns:
A `(b)`-dim Tensor of Posterior Mean values at the given design
points `X`.
"""
posterior = self._get_posterior(X=X)
return posterior.mean.view(X.shape[:-2])
[docs]class ProbabilityOfImprovement(AnalyticAcquisitionFunction):
r"""Single-outcome Probability of Improvement.
Probability of improvment over the current best observed value, computed
using the analytic formula under a Normal posterior distribution. Only
supports the case of q=1. Requires the posterior to be Gaussian. The model
must be single-outcome.
`PI(x) = P(y >= best_f), y ~ f(x)`
Example:
>>> model = SingleTaskGP(train_X, train_Y)
>>> PI = ProbabilityOfImprovement(model, best_f=0.2)
>>> pi = PI(test_X)
"""
def __init__(
self,
model: Model,
best_f: Union[float, Tensor],
objective: Optional[ScalarizedObjective] = None,
maximize: bool = True,
) -> None:
r"""Single-outcome analytic Probability of Improvement.
Args:
model: A fitted single-outcome model.
best_f: Either a scalar or a `b`-dim Tensor (batch mode) representing
the best function value observed so far (assumed noiseless).
objective: A ScalarizedObjective (optional).
maximize: If True, consider the problem a maximization problem.
"""
super().__init__(model=model, objective=objective)
self.maximize = maximize
if not torch.is_tensor(best_f):
best_f = torch.tensor(best_f)
self.register_buffer("best_f", best_f)
[docs] @t_batch_mode_transform(expected_q=1)
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate the Probability of Improvement on the candidate set X.
Args:
X: A `(b) x 1 x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
Returns:
A `(b)`-dim tensor of Probability of Improvement values at the given
design points `X`.
"""
self.best_f = self.best_f.to(X)
posterior = self._get_posterior(X=X)
mean, sigma = posterior.mean, posterior.variance.sqrt()
batch_shape = X.shape[:-2]
mean = posterior.mean.view(batch_shape)
sigma = posterior.variance.sqrt().clamp_min(1e-9).view(batch_shape)
u = (mean - self.best_f.expand_as(mean)) / sigma
if not self.maximize:
u = -u
normal = Normal(torch.zeros_like(u), torch.ones_like(u))
return normal.cdf(u)
[docs]class UpperConfidenceBound(AnalyticAcquisitionFunction):
r"""Single-outcome Upper Confidence Bound (UCB).
Analytic upper confidence bound that comprises of the posterior mean plus an
additional term: the posterior standard deviation weighted by a trade-off
parameter, `beta`. Only supports the case of `q=1` (i.e. greedy, non-batch
selection of design points). The model must be single-outcome.
`UCB(x) = mu(x) + sqrt(beta) * sigma(x)`, where `mu` and `sigma` are the
posterior mean and standard deviation, respectively.
Example:
>>> model = SingleTaskGP(train_X, train_Y)
>>> UCB = UpperConfidenceBound(model, beta=0.2)
>>> ucb = UCB(test_X)
"""
def __init__(
self,
model: Model,
beta: Union[float, Tensor],
objective: Optional[ScalarizedObjective] = None,
maximize: bool = True,
) -> None:
r"""Single-outcome Upper Confidence Bound.
Args:
model: A fitted single-outcome GP model (must be in batch mode if
candidate sets X will be)
beta: Either a scalar or a one-dim tensor with `b` elements (batch mode)
representing the trade-off parameter between mean and covariance
objective: A ScalarizedObjective (optional).
maximize: If True, consider the problem a maximization problem.
"""
super().__init__(model=model, objective=objective)
self.maximize = maximize
if not torch.is_tensor(beta):
beta = torch.tensor(beta)
self.register_buffer("beta", beta)
[docs] @t_batch_mode_transform(expected_q=1)
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate the Upper Confidence Bound on the candidate set X.
Args:
X: A `(b) x 1 x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
Returns:
A `(b)`-dim Tensor of Upper Confidence Bound values at the given
design points `X`.
"""
self.beta = self.beta.to(X)
posterior = self._get_posterior(X=X)
batch_shape = X.shape[:-2]
mean = posterior.mean.view(batch_shape)
variance = posterior.variance.view(batch_shape)
delta = (self.beta.expand_as(mean) * variance).sqrt()
if self.maximize:
return mean + delta
else:
return -mean + delta
[docs]class ConstrainedExpectedImprovement(AnalyticAcquisitionFunction):
r"""Constrained Expected Improvement (feasibility-weighted).
Computes the analytic expected improvement for a Normal posterior
distribution, weighted by a probability of feasibility. The objective and
constraints are assumed to be independent and have Gaussian posterior
distributions. Only supports the case `q=1`. The model should be
multi-outcome, with the index of the objective and constraints passed to
the constructor.
`Constrained_EI(x) = EI(x) * Product_i P(y_i \in [lower_i, upper_i])`,
where `y_i ~ constraint_i(x)` and `lower_i`, `upper_i` are the lower and
upper bounds for the i-th constraint, respectively.
Example:
>>> # example where 0th output has a non-negativity constraint and
... # 1st output is the objective
>>> model = SingleTaskGP(train_X, train_Y)
>>> constraints = {0: (0.0, None)}
>>> cEI = ConstrainedExpectedImprovement(model, 0.2, 1, constraints)
>>> cei = cEI(test_X)
"""
def __init__(
self,
model: Model,
best_f: Union[float, Tensor],
objective_index: int,
constraints: Dict[int, Tuple[Optional[float], Optional[float]]],
maximize: bool = True,
) -> None:
r"""Analytic Constrained Expected Improvement.
Args:
model: A fitted single-outcome model.
best_f: Either a scalar or a `b`-dim Tensor (batch mode) representing
the best function value observed so far (assumed noiseless).
objective_index: The index of the objective.
constraints: A dictionary of the form `{i: [lower, upper]}`, where
`i` is the output index, and `lower` and `upper` are lower and upper
bounds on that output (resp. interpreted as -Inf / Inf if None)
maximize: If True, consider the problem a maximization problem.
"""
# use AcquisitionFunction constructor to avoid check for objective
super(AnalyticAcquisitionFunction, self).__init__(model=model)
self.objective = None
self.maximize = maximize
self.objective_index = objective_index
self.constraints = constraints
self.register_buffer("best_f", torch.as_tensor(best_f))
self._preprocess_constraint_bounds(constraints=constraints)
self.register_forward_pre_hook(convert_to_target_pre_hook)
[docs] @t_batch_mode_transform(expected_q=1)
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate Constrained Expected Improvement on the candidate set X.
Args:
X: A `(b) x 1 x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
Returns:
A `(b)`-dim Tensor of Expected Improvement values at the given
design points `X`.
"""
self.best_f = self.best_f.to(X)
posterior = self._get_posterior(X=X)
means = posterior.mean.squeeze(dim=-2) # (b) x m
sigmas = posterior.variance.squeeze(dim=-2).sqrt().clamp_min(1e-9) # (b) x m
# (b) x 1
oi = self.objective_index
mean_obj = means[..., oi : oi + 1]
sigma_obj = sigmas[..., oi : oi + 1]
u = (mean_obj - self.best_f.expand_as(mean_obj)) / sigma_obj
if not self.maximize:
u = -u
normal = Normal(
torch.zeros(1, device=u.device, dtype=u.dtype),
torch.ones(1, device=u.device, dtype=u.dtype),
)
ei_pdf = torch.exp(normal.log_prob(u)) # (b) x 1
ei_cdf = normal.cdf(u)
ei = sigma_obj * (ei_pdf + u * ei_cdf)
prob_feas = self._compute_prob_feas(X=X, means=means, sigmas=sigmas)
ei = ei.mul(prob_feas)
return ei.squeeze(dim=-1)
def _preprocess_constraint_bounds(
self, constraints: Dict[int, Tuple[Optional[float], Optional[float]]]
) -> None:
r"""Set up constraint bounds.
Args:
constraints: A dictionary of the form `{i: [lower, upper]}`, where
`i` is the output index, and `lower` and `upper` are lower and upper
bounds on that output (resp. interpreted as -Inf / Inf if None)
"""
con_lower, con_lower_inds = [], []
con_upper, con_upper_inds = [], []
con_both, con_both_inds = [], []
con_indices = list(constraints.keys())
if len(con_indices) == 0:
raise ValueError("There must be at least one constraint.")
if self.objective_index in con_indices:
raise ValueError(
"Output corresponding to objective should not be a constraint."
)
for k in con_indices:
if constraints[k][0] is not None and constraints[k][1] is not None:
if constraints[k][1] <= constraints[k][0]:
raise ValueError("Upper bound is less than the lower bound.")
con_both_inds.append(k)
con_both.append([constraints[k][0], constraints[k][1]])
elif constraints[k][0] is not None:
con_lower_inds.append(k)
con_lower.append(constraints[k][0])
elif constraints[k][1] is not None:
con_upper_inds.append(k)
con_upper.append(constraints[k][1])
# tensor-based indexing is much faster than list-based advanced indexing
self.register_buffer("con_lower_inds", torch.tensor(con_lower_inds))
self.register_buffer("con_upper_inds", torch.tensor(con_upper_inds))
self.register_buffer("con_both_inds", torch.tensor(con_both_inds))
# tensor indexing
self.register_buffer("con_both", torch.tensor(con_both, dtype=torch.float))
self.register_buffer("con_lower", torch.tensor(con_lower, dtype=torch.float))
self.register_buffer("con_upper", torch.tensor(con_upper, dtype=torch.float))
def _compute_prob_feas(self, X: Tensor, means: Tensor, sigmas: Tensor) -> Tensor:
r"""Compute feasibility probability for each batch of X.
Args:
X: A `(b) x 1 x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
means: A `(b) x m`-dim Tensor of means.
sigmas: A `(b) x m`-dim Tensor of standard deviations.
Returns:
A `(b) x 1`-dim tensor of feasibility probabilities
Note: This function does case-work for upper bound, lower bound, and both-sided
bounds. Another way to do it would be to use 'inf' and -'inf' for the
one-sided bounds and use the logic for the both-sided case. But this
causes an issue with autograd since we get 0 * inf.
TODO: Investigate further.
"""
output_shape = X.shape[:-2] + torch.Size([1])
prob_feas = torch.ones(output_shape, device=X.device, dtype=X.dtype)
if len(self.con_lower_inds) > 0:
self.con_lower_inds = self.con_lower_inds.to(device=X.device)
normal_lower = _construct_dist(means, sigmas, self.con_lower_inds)
prob_l = 1 - normal_lower.cdf(self.con_lower)
prob_feas = prob_feas.mul(torch.prod(prob_l, dim=-1, keepdim=True))
if len(self.con_upper_inds) > 0:
self.con_upper_inds = self.con_upper_inds.to(device=X.device)
normal_upper = _construct_dist(means, sigmas, self.con_upper_inds)
prob_u = normal_upper.cdf(self.con_upper)
prob_feas = prob_feas.mul(torch.prod(prob_u, dim=-1, keepdim=True))
if len(self.con_both_inds) > 0:
self.con_both_inds = self.con_both_inds.to(device=X.device)
normal_both = _construct_dist(means, sigmas, self.con_both_inds)
prob_u = normal_both.cdf(self.con_both[:, 1])
prob_l = normal_both.cdf(self.con_both[:, 0])
prob_feas = prob_feas.mul(torch.prod(prob_u - prob_l, dim=-1, keepdim=True))
return prob_feas
[docs]class NoisyExpectedImprovement(ExpectedImprovement):
r"""Single-outcome Noisy Expected Improvement (via fantasies).
This computes Noisy Expected Improvement by averaging over the Expected
Improvemnt values of a number of fantasy models. Only supports the case
`q=1`. Assumes that the posterior distribution of the model is Gaussian.
The model must be single-outcome.
`NEI(x) = E(max(y - max Y_baseline), 0)), (y, Y_baseline) ~ f((x, X_baseline))`,
where `X_baseline` are previously observed points.
Note: This acquisition function currently relies on using a FixedNoiseGP (required
for noiseless fantasies).
Example:
>>> model = FixedNoiseGP(train_X, train_Y, train_Yvar=train_Yvar)
>>> NEI = NoisyExpectedImprovement(model, train_X)
>>> nei = NEI(test_X)
"""
def __init__(
self,
model: GPyTorchModel,
X_observed: Tensor,
num_fantasies: int = 20,
maximize: bool = True,
) -> None:
r"""Single-outcome Noisy Expected Improvement (via fantasies).
Args:
model: A fitted single-outcome model.
X_observed: A `n x d` Tensor of observed points that are likely to
be the best observed points so far.
num_fantasies: The number of fantasies to generate. The higher this
number the more accurate the model (at the expense of model
complexity and performance).
maximize: If True, consider the problem a maximization problem.
"""
if not isinstance(model, FixedNoiseGP):
raise UnsupportedError(
"Only FixedNoiseGPs are currently supported for fantasy NEI"
)
# sample fantasies
with torch.no_grad():
posterior = model.posterior(X=X_observed)
sampler = SobolQMCNormalSampler(num_fantasies)
Y_fantasized = sampler(posterior).squeeze(-1)
batch_X_observed = X_observed.expand(num_fantasies, *X_observed.shape)
# The fantasy model will operate in batch mode
fantasy_model = _get_noiseless_fantasy_model(
model=model, batch_X_observed=batch_X_observed, Y_fantasized=Y_fantasized
)
if maximize:
best_f = Y_fantasized.max(dim=-1)[0]
else:
best_f = Y_fantasized.min(dim=-1)[0]
super().__init__(model=fantasy_model, best_f=best_f, maximize=maximize)
[docs] def forward(self, X: Tensor) -> Tensor:
r"""Evaluate Expected Improvement on the candidate set X.
Args:
X: A `b1 x ... bk x 1 x d`-dim batched tensor of `d`-dim design points.
Returns:
A `b1 x ... bk`-dim tensor of Noisy Expected Improvement values at
the given design points `X`.
"""
# add batch dimension for broadcasting to fantasy models
return super().forward(X.unsqueeze(-3)).mean(dim=-1)
def _construct_dist(means: Tensor, sigmas: Tensor, inds: Tensor) -> Normal:
mean = means.index_select(dim=-1, index=inds)
sigma = sigmas.index_select(dim=-1, index=inds)
return Normal(loc=mean, scale=sigma)
def _get_noiseless_fantasy_model(
model: FixedNoiseGP, batch_X_observed: Tensor, Y_fantasized: Tensor
) -> FixedNoiseGP:
r"""Construct a fantasy model from a fitted model and provided fantasies.
The fantasy model uses the hyperparameters from the original fitted model and
assumes the fantasies are noiseless.
Args:
model: a fitted FixedNoiseGP
batch_X_observed: A `b x n x d` tensor of inputs where `b` is the number of
fantasies.
Y_fantasized: A `b x n` tensor of fantasized targets where `b` is the number of
fantasies.
Returns:
The fantasy model.
"""
# initialize a copy of FixedNoiseGP on the original training inputs
# this makes FixedNoiseGP a non-batch GP, so that the same hyperparameters
# are used across all batches (by default, a GP with batched training data
# uses independent hyperparameters for each batch).
fantasy_model = FixedNoiseGP(
train_X=model.train_inputs[0],
train_Y=model.train_targets.unsqueeze(-1),
train_Yvar=model.likelihood.noise_covar.noise.unsqueeze(-1),
)
# update training inputs/targets to be batch mode fantasies
fantasy_model.set_train_data(
inputs=batch_X_observed, targets=Y_fantasized, strict=False
)
# use noiseless fantasies
fantasy_model.likelihood.noise_covar.noise = torch.full_like(Y_fantasized, 1e-7)
# load hyperparameters from original model
state_dict = deepcopy(model.state_dict())
fantasy_model.load_state_dict(state_dict)
return fantasy_model
[docs]class ScalarizedPosteriorMean(AnalyticAcquisitionFunction):
r"""Scalarized Posterior Mean.
This acquisition function returns a scalarized (across the q-batch)
posterior mean given a vector of weights.
"""
def __init__(
self,
model: Model,
weights: Tensor,
objective: Optional[ScalarizedObjective] = None,
) -> None:
r"""Scalarized Posterior Mean.
Args:
model: A fitted single-outcome model.
weights: A tensor of shape `q` for scalarization.
objective: A ScalarizedObjective. Required for multi-output models.
"""
super().__init__(model=model, objective=objective)
self.register_buffer("weights", weights.unsqueeze(dim=0))
[docs] @t_batch_mode_transform()
def forward(self, X: Tensor) -> Tensor:
r"""Evaluate the scalarized posterior mean on the candidate set X.
Args:
X: A `(b) x q x d`-dim Tensor of `(b)` t-batches of `d`-dim design
points each.
Returns:
A `(b)`-dim Tensor of Posterior Mean values at the given design
points `X`.
"""
posterior = self._get_posterior(X=X)
weighted_means = posterior.mean.squeeze(dim=-1) * self.weights
return weighted_means.sum(dim=-1)
